Postdoctoral Researcher in Confidential High Performance Computing for AI in Cancer Care (100%)

University of Basel | Department of Mathematics and Computer Science | High Performance Computing (HPC) Research Group

Start date: September 2026 (flexible) 
Duration: 3 years (36 months)
 
Project
The High Performance Computing (HPC) research group (Prof. Florina M. Ciorba), Department of Mathematics and Computer Science, University of Basel, invites applications for a Postdoctoral Researcher funded by the SNF Bridge Discovery project "Family Gene Toolkit (FGT)" (grant no. 237643), a digital platform supporting families affected by hereditary cancer syndromes (HBOC, Lynch Syndrome). The next-generation FGT v3.0 will integrate large language models, multilingual AI, and confidential HPC to support patients and clinicians in real-world healthcare environments.
 

Your position

You will lead research on trustworthy and aligned LLMs operating in confidential HPC environments, involving training and adapting 70B-scale multilingual and medical language models on secure HPC infrastructure. Your work focuses on three areas:
  • Preference optimization and LLM alignment: design preference-based training and fine-tuning methods (RLHF, PPO, DPO, reward modeling) for medical and multilingual LLMs.
  • Agentic and tool-augmented AI systems: develop reasoning and interaction capabilities including RAG, in-context learning, chain-of-thought reasoning, and agentic workflows with external tools.
  • Trustworthy AI evaluation and confidential deployment: develop evaluation pipelines (e.g., LLM-as-a-judge), robustness/bias/hallucination mitigation, and multilingual evaluation protocols.

As part of this position, your tasks also include: 
  • Conduct high-quality research aligned with the project objectives
  • Publish in top venues (NeurIPS, ICML, ICLR, ACL/EMNLP, MLSys, SC, HPDC, EuroSys, ASPLOS, etc.)
  • Present research at international conferences, workshops, and seminars
  • Contribute to open-source software and reproducible research artifacts
  • Collaborate actively, fruitfully, and respectfully with the PIs, the HPC group, and partner institutions
  • Contribute to teaching (max. one class per semester) and co-supervise Bachelor's/Master's students

Your profile

We seek a highly motivated researcher interested in integrating foundational AI and HPC research with real-world healthcare applications.

Required
  • PhD in Computer Science / AI / Machine Learning
  • Strong publication record in AI, ML systems, or related areas
  • Strong programming skills in Python, C/C++ and experience with PyTorch, TensorFlow, JAX, or similar ML frameworks
  •  Experience with large-scale training or inference of LLMs
  •  Interest in LLM alignment, reinforcement learning, or generative AI systems
  • Fluency in English; clear communication, problem-solving, and collaborative mindset


Highly desirable
  •  Experience with distributed training or ML systems
  •  Knowledge of privacy-enhancing technologies and parallel programming
  • Experience with multilingual AI or agentic systems

Diversity: We welcome applications from candidates with diverse backgrounds. Even if you do not meet all requirements, we encourage you to apply if you identify with the profile.

We offer you

  • Competitive 100% funding per SNSF guidelines (~CHF 90'000/year)
  •  Access to modern GPU clusters and confidential-computing infrastructure
  • Collaboration with leading researchers in AI & HPC systems and digital health
  • Support for international conference travel and networking
  • Stimulating research environment at a leading European university

Application / Contact

Interested?
 
Submit a single PDF file (named Lastname-Firstname-Postdoc-FGT-Application.pdf) and a motivation statement via the application portal containing:
  • Curriculum vitae with publication list (open-access links)
  • Degree Transcripts (Bachelor's, Master's, Doctoral) 
  • Theses (Bachelor's, Master's, and Doctoral)
  •  Links to own code repositories or software projects
  • At least one relevant publication with a short justification
  • Motivation statement addressing the questions: (1) why this position, (2) which aspects interest you, (3) relevant prior experience, and (4) goals during the postdoc
  • Contact details for 1–2 referees (recommendation letters will be discarded)
 
Application deadline: April 24, 2026 (rolling review until filled). Only short-listed candidates will be invited for interview. Due to the anticipated volume of applications, notifications are sent only to short-listed applicants. 
 
Applications by e-mail will not be considered. For recruiters/staffing agencies: Acquisition in response to this advertisement is not appreciated.
 
For questions: Email Prof. Florina M. Ciorba (florina.ciorba@unibas.ch) with subject: "BRIDGE FGT – Postdoc position"